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Nygaard, Malene; Kopatz, Alexander; Speed, James David Mervyn; Martin, Michael David; Prestø, Tommy & Kleven, Oddmund
[Vis alle 7 forfattere av denne artikkelen]
(2023).
SNP genotyping and environmental niche modelling
using herbarium specimens of the northern dragonhead,
Dracocephalum ruyschiana (Lamiaceae).
Bauhinia.
ISSN 0067-4605.
29,
s. 127–128.
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Bendiksby, Mika
(2023).
Nytt fra fungariet.
Funga.
1(1),
s. 6–7.
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Bendiksby, Mika
(2023).
Hva er et fungarium og hva er poenget?
Funga.
1(1),
s. 4–5.
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Fungariene huser referansemateriale for arter, populasjoner og genetiske ressurser i tid og rom og representerer sånn sett en viktig infrastruktur for biomangfoldsforskning
-
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Bendiksby, Mika & Wollan, Anders K.
(2023).
Slørsoppmiddagen
(https://radio.nrk.no/podkast/abels_taarn).
[Radio].
NRK P2: Abels tårn.
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Hanne Aass drar på en middag der soppeksperter serverer slørsopp, en slekt som sopplukkere har blitt bedt om å styre langt unna. Noen av slørsoppene er nemlig blant våre dødeligste giftsopper.
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Evankow, Ann; Bendiksby, Mika & Timdal, Einar
(2023).
Cryptic diversity of the lichen genus Psora in cryptogam collections .
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Matten, Damaris Marina; Bendiksby, Mika; Martin, Michael David & Speed, James David Mervyn
(2023).
Spatial patterns of species and phylogenetic diversity of vascular plants in Norway and Fennoscandia.
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Bendiksby, Mika
(2023).
The potential of fungarium specimens and DNA barcodes in fungal research.
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Bendiksby, Mika
(2022).
Stort ukjent soppmangfold.
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Chimal Ballesteros, Jesus Adrian; Bjorå, Charlotte Sletten; Bendiksby, Mika & Carlsen, Tor
(2022).
Target-capture and angiosperm-353 probe-set on Chlorophytum: a viable way to determine species complexes?
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Løken, Solveig Bua; Bendiksby, Mika & Stedje, Brita
(2022).
A HTS approach for delimiting taxa of Drimiopsis, Ledebouria and Resnova (Asparagaceae, subfamily Scilloidea).
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Bendiksby, Mika; Thorbek, Birgitte Lisbeth Graae; Bjorå, Charlotte Sletten & Halvorsen, Rune
(2022).
Simple procedures for obtaining DNA sequences from old herbarium specimens .
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Bjorå, Charlotte Sletten; Bendiksby, Mika; Løfall, Bjørn Petter & Timdal, Einar
(2022).
Collections from the cold solving hot questions
.
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Evankow, Ann; Bendiksby, Mika; Speed, James David Mervyn & Timdal, Einar
(2021).
INTEGRATIVE TAXONOMY OF THE Psoraceae.
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Løken, Solveig Bua; Bendiksby, Mika & Stedje, Brita
(2020).
Phylogeny, character state evolution and species delimitation in Drimiopsis, Ledebouria and Resnova (Asparagaceae, subfamily Scilloidea) .
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Evankow, Ann; Bendiksby, Mika & Timdal, Einar
(2020).
Integrative taxonomy of the Psoraceae (Lichenized Ascomycota).
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Bendiksby, Mika
(2020).
Progress and activities in the researcher group «Integrative Taxonomy and DNA barcoding» (TAXA).
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Nygård, Malene Østreng & Bendiksby, Mika
(2020).
Vi måler tempen på forskningsfeltet biosystematikk.
Biolog.
ISSN 0801-0722.
2,
s. 14–21.
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Moen, Victoria Stornes & Bendiksby, Mika
(2020).
Soppevangeliet.
Gemini.
ISSN 0802-085X.
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Bendiksby, Mika
(2020).
DNA-navigering i lav: strekkoding, kryptisk artsmangfold og andre overraskelser.
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Bendiksby, Mika
(2020).
The future of collections-based research in Systematic Mycology.
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Matten, Damaris Marina; Bendiksby, Mika; Martin, Michael David & Speed, James David Mervyn
(2020).
Phylogenetic diversity of Fennoscandian vascular plants: Do we protect the relevant areas?
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Matten, Damaris Marina; Bendiksby, Mika; Martin, Michael David & Speed, James David Mervyn
(2020).
Phylogenetic diversity of Fennoscandian vascular plants: Do we protect the relevant areas?
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Tiller, Kristin; Ellingsen, Ellen J. Grav; Ekrem, Torbjørn; Alsli, Lise Mariann Bolstad; Austrheim, Gunnar & Bendiksby, Mika
[Vis alle 26 forfattere av denne artikkelen]
(2019).
(Dis)Harmoni i hjemlandet – Masterplan for Nye Hovedutstillinger ved NTNU Vitenskapsmuseet.
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Moen, Victoria Stornes & Bendiksby, Mika
(2019).
Naturhistoriske samlinger som ressurs for samfunnet.
Orebladet.
ISSN 1501-4924.
1,
s. 25–30.
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Stornes Moen, Victoria; Bendiksby, Mika & Frisch, Andreas
(2019).
Molecular systematics and species delimitation in Coniocarpon and Arthonia punctiformis s.lat. in Norway.
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Stornes Moen, Victoria; Bendiksby, Mika; Frisch, Andreas & Grube, Martin
(2019).
Molecular systematics and species delimitation in Coniocarpon and Arthonia punctiformis sensu lato (Arthoniaceae) in Norway.
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Bendiksby, Mika
(2019).
“Lav og lavboende sopper i norske regnskoger”.
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Bendiksby, Mika; Frisch, Andreas & Holien, Håkon
(2019).
A phylogenetic survey of Arthrorhaphis (Arthrorhaphidaceae) including new taxa in the A. citrinella species complex.
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Bendiksby, Mika
(2019).
Multifaceted diversity in a fascinating branch of ascomycete associations.
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Bendiksby, Mika
(2019).
DEN NORSKE JUNGELEN. Boreal regnskog ̶ Hva er det? Hvor finnes den? Hva skal vi med den?
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Løken, Solveig Bua; Bendiksby, Mika & Stedje, Brita
(2019).
LEDEBOURIA & FRIENDS
- Phylogeny, character state evolution and species delimitation in three African monocot genera: Drimiopsis, Ledebouria and Resnova (Asparagaceae, subfamily Scilloidea).
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Frisch, Andreas & Bendiksby, Mika
(2019).
Hidden treasures in your front yard: Crustose lichens and lichenicolous fungi in the Norwegian boreo-nemoral and boreal rain forests.
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Mienna, Ida Marielle; Speed, James David Mervyn; Martin, Michael David; Bendiksby, Mika; Thornhill, Andrew H & Mishler, Brent D
(2018).
The Spatial Distribution Of Phylogenetic Diversity And Endemism In The Norwegian Vascular Flora.
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Mienna, Ida Marielle; Speed, James David Mervyn; Martin, Michael David; Bendiksby, Mika; Thornhill, Andrew H & Mishler, Brent D
(2018).
Patterns and drivers of vascular plant phylogenetic diversity and endemism across Norway.
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Bjorå, Charlotte Sletten; Stedje, Brita & Bendiksby, Mika
(2017).
A phylogenetic analysis of Anthericum L. and Chlorophytum Ker Gawl. (Asparagaceae)
.
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Bjorå, Charlotte Sletten; Stedje, Brita; Bendiksby, Mika; Kativu, Shakkie & Nordal, Inger
(2017).
A phylogenetic analysis of Anthericum and Chlorophytum.
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Marthinsen, Gunnhild; Bendiksby, Mika; Brandrud, Tor Erik; Dima, Bálint; Hansen, Lars Ove & Johnsen, Arild
[Vis alle 8 forfattere av denne artikkelen]
(2017).
Discordance between morphology and DNA barcodes in lichens, fungi and insects.
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Mienna, Ida M; Thornhill, Andrew H; Mishler, Brent D; Bendiksby, Mika; Speed, James David Mervyn & Martin, Michael David
(2017).
Spatial phylogenetics of the Norwegian vascular plant flora.
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Bendiksby, Mika
(2016).
Pizzakrydder: mat, botanikk og genetikk.
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Dahl, Malin Stapnes; Bendiksby, Mika & Timdal, Einar
(2016).
Molecular systematics of the lichen genus Sporacestra and relatives (Ramalinaceae, Ascomycota).
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Toreskaas, Anne Karin; Bendiksby, Mika & Timdal, Einar
(2016).
Molecular systematics of the lichen genus Eschatogonia.
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Kistenich, Sonja Daniela; Timdal, Einar; Bendiksby, Mika & Ekman, Stefan
(2016).
Molecular phylogenetics and taxonomy of the lichen family Ramalinaceae.
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Dahl, Malin Stapnes; Bendiksby, Mika & Timdal, Einar
(2016).
Molecular systematics of the lichen genus Sporacestra and relatives (Ramalinaceae, Ascomycota).
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Toreskaas, Anne Karin; Bendiksby, Mika & Timdal, Einar
(2016).
Molecular systematics of the lichen genus Eschatogonia.
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Kistenich, Sonja Daniela; Timdal, Einar; Bendiksby, Mika & Ekman, Stefan
(2016).
Molecular phylogenetics and taxonomy of the lichen family Ramalinaceae.
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Frisch, Andreas; Holien, Håkon; Ohmura, Yoshihito & Bendiksby, Mika
(2016).
Molecular systematics of Arthrorhaphis with special consideration of the A. alpina ― A. citrinella species complex.
Vis sammendrag
Background:
Arthrorhaphis Th. Fr. includes c. 11 species and varieties of lichenised and lichenicolous fungi. The genus thrives in temperate to arctic-alpine regions of the Northern Hemisphere. Arthrorhaphis alpina, A. citrinella and A. grisea extend their distributions into the Southern Hemisphere [1], and A. citrinella var. catolechioides is restricted to Australasia [1]. Arthrorhaphis is well-studied in Europe and Central Asia [2,3,4], but species delimitation of taxa containing pulvinic acid derivates remains problematic. Arthrorhaphis alpina and A. citrinella in particular show considerable morphological variation at the world level that is presently not well understood.
Material and Methods:
New mitochondrial (mtSSU) and nuclear (nLSU, RPB1 and ITS 2) DNA sequences were generated for 142 specimens representing all currently described Arthrorhaphis species except A. aeruginosa*.
We sequenced specimens from all continents. Due to the availability of collections, our sampling is biased towards northern and central Europe and parts of central and eastern Asia.
All specimens were identified following current species concepts and the key morphological characters were noted.
We applied Bayesian methods of phylogenetic tree reconstruction to the concatenated alignment of all four gene loci.
Principal results:
All lichenised species of Arthrorhaphis containing pulvinic acid derivates are monophyletic and apparently closely related
Except for A. jungens, all species are recovered in our phylogeny according to the current morphology based concepts
Ascospore type and presence / absence of Ca-oxalate crystals are confirmed as good characters for separating A. alpina s.l. (incl. A. vacillans and A. jungens) and A. citrinella s.l.
A. alpina s.l. and A. citrinella s.l. comprise several genetically distinct lineages being correlated with morphology and / or geographical distribution
The obligate parasitic taxa are separated by long branches and placed together in a basal position on the phylogenetic tree
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Haugan, Reidar; Timdal, Einar; Frisch, Andreas; Rui, Siri & Bendiksby, Mika
(2016).
Miriquidica – yet another non-monophyletic lichen genus rich in cryptic species.
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Background:
Miriquidica Hertel & Rambold comprises about 30 saxicolous, mainly alpine species worldwide. The genus was originally delimited by the presence of miriquidic acid in most of the species and by asci of the “Lecanora-type”. The species are often difficult to identify without chemical and microscopical investigations. Although they are common rock lichens in some regions in the Northern Hemisphere, many Miriquidica species remain poorly understood.
Material and Methods:
We have collected Miriquidica extensively throughout Fennoscandia, over wide climatic, geographical and ecological gradients. We studied this, and additional material of available Miriquidica species and presumed close relatives, using TLC, microscopy, and multi-locus DNA-sequencing. We have compiled a dataset with 187 accessions representing specimens collected as Miriquidica, their presumed close relatives, and appropriate outgroups. Some sequences were downloaded from genbank (mainly from Singh et al. 2013). The molecular work was undertaken as described in Bendiksby et al. (2013). A partitioned concatenated dataset of one mitochondrial (mtSSU) and two nuclear genetic regions (ITS and MCM7) was analysed phylogenetically using Maximum likelihood (ML) on the CIPRES Science Gateway (Miller et al. 2010). For the ML analysis, we used the RAxML-HPC black box with rapid bootstrapping and full ML analysis under the GTR+GAMMA approximation.
Results:
We have discovered several new species, many of them so-called cryptic and Miriquidica hence falls into the line of crustose genera showing a high degree of cryptic speciation (Fig. 1). Our results also show that Miriquidica, as currently circumscribed, is polyphyletic, i.e. one species (M. pycnocarpa) is extraneous in the genus. After its removal from Miriquidica, the genus remains paraphyletic, with species of Protoparmelia (cfr. Singh et al. 2013), Lecanora, Lecidea s.lat., and Myochroidea nested. We recognize several new species, of which we include two in Fig. 1 (M. scoriae and M. ymei), and recombine 11 others.
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Košuthová, Alica; Fačkovcová, Zuzana; Guttová, Anna; Holien, Håkon; Timdal, Einar & Wedin, Mats
[Vis alle 8 forfattere av denne artikkelen]
(2016).
DNA barcoding of lichens and biosystematics; the case studies of genera: Cladonia, Placynthium and Solenopsora.
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The main motivation for this project is a situation of shared research questions, complementary competences, and a desire for knowledge and data sharing, both taxonomically and methodologically, between Masaryk University and NTNU. On the lichenology side, there was a motivation for nourishing and fomalizing a dawning network of european lichen systematists. All involved, both the core participants (Bendiksby, Holien and Košuthová) and the accompanyiong scientists (Guttová, Steinová, Timdal, Wedin and Westberg), have some form of ongoing work with at least one participant of this project. However, their respective networks and competences are not the same, and new connections within the group has been made in the present project.
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Košuthová, Alica; Fačkovcová, Z.; Flatberg, Kjell Ivar; Guttová, Anna; Hájek, Michael & Hassel, Kristian
[Vis alle 16 forfattere av denne artikkelen]
(2015).
DNA barcoding of bryophytes and lichens, including biosystematic studies of selected groups.
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Bendiksby, Mika; Haugan, Reidar; Spribille, Toby & Timdal, Einar
(2015).
DNA barcoding and phylogenetics – An example from the Calvitimela aglaea lichen complex (Tephromelataceae, Lecanorales).
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Bendiksby, Mika & Timdal, Einar
(2014).
Molecular systematics and taxonomy of Southeast Asian members of the tropical rainforest genus Phyllopsora (Ramalinaceae).
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Bendiksby, Mika; Mazzoni, Sabrina; Jørgensen, Marte Holten; Halvorsen, Rune & Holien, Håkon
(2014).
Staurolemma omphalarioides: long-distance dispersal or vicariance?
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Nygaard, Malene; Bendiksby, Mika; Speed, James David Mervyn & Martin, Mike
(2022).
Integrative biosystematics and conservation genomics – holistic studies of two red-listed plants in Norway.
Norges teknisk-naturvitenskapelige universitet.
ISSN 978-82-326-6339-2.
2022(68).
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Niroula, Dhirendra; Bendiksby, Mika & Martin, Michael David
(2018).
Global functional genomics of the Irish potato famine pathogen Phytophthora infestans.
NTNU Vitenskapsmuseet.
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Mienna, Ida Marielle; Martin, Michael David; Speed, James David Mervyn & Bendiksby, Mika
(2018).
Patterns and drivers of phylogenetic diversity and endemism in the Norwegian vascular flora.
NTNU.